If all goes well, after a short installation, you should see “Installation Successfully Completed”. Click “Install”.Ĭlick “Yes” when asked if you want to allow the program to make changes on the computer. Windows Installationĭouble-click the file that was downloaded in the previous step. In either case, a file will be downloaded. If you are on a Mac, click the “Download Cyberduck for Mac” If you are on a Windows system, click the “Download Cyberduck for Windows” link on the left side of the page. If you need credentials for anĮxternal collaborator, or if you are having a permissions issue, If another Fred HutchĮmployee needs credentials, they can obtain their own credentials in this same manner. NOTE: Do NOT share these credentials with any other user, inside or outside of Fred Hutch. Please keep this page open for use in the next step. This page will display your Access Key and Secret Key. You can only access this page from the Fred Hutch network (or when connected via VPN).This page will prompt you for your HutchNet ID and password.To use Cyberduck with S3, you will need AWS credentials. Set the application protocol in the dropdown menu to FTP (File Transfer Protocol).UsingCyberduckAndS3AtFredHutch UsingCyberduckAndS3AtFredHutch View on GitHub Step 1: Obtain your AWS Credentials.Open Cyberduck and click on Open Connection.ĭue to some issues of connecting to S3 bucket on Cyberduck using an anonymous login, you will need to take the following steps for a workaround:.Instructions for using Cyberduck are as follows: Cyberduck also has a command line version that works with Windows, Mac OS X, and Linux. Cyberduck is one such program that works with Windows and Mac OS X. There are file transfer programs that can handle S3 natively and will allow you to navigate through the data using a file browser. We have written a script (described below) that can perform custom dataset downloads for you via HTTP. Each file can only be accessed using its literal name- wildcards will not work. You can obtain a URL for each desired file here or from LORIS and then download it using the AWS command line interface or an HTTP client such as a web browser, wget, or curl. DICOMs are not included.Įach file in the S3 bucket can only be accessed using HTTP (i.e., no ftp or scp ). Since BIDS makes provisions for phenotypic and data collected during scanning (physiological,event-related), this data is also included in this folder in addition to the MRI series NifTIs. RawDataBIDS : Raw data organized in the BIDS format.RawDataTars : Raw data compressed with Gzip and separated by release.The directory tree is organized with participants at the root, visits below participants, and individual series below visits. RawData : Raw data for Rockland sample releases converted to NifTI format and not separated by release.We do not recommend downloading data from these folders since they have not been updated and are organized with old study codes: Step-by-step instructions to download: Here you can see here a pdf with step-by-step instruction on how to download neuroimaging data using a bash or a python script. This folder includes data from all the releases. RawDataBidsLatest : The latest data release of raw data organized in the BIDS format.The data is currently organized as follows: The bucket is publicly available and the path is s3://fcp-indi/data/Projects/RocklandSample/RawDataBIDSLatest. Note: For a list of all possible study codes, see here.ĭownloading Neuroimaging Data Release Data from the FCP-INDI S3 Bucket ¶ĭata for the Rockland Sample Neuroimaging Data Release are available for download in an Amazon Web Services S3 bucket. The Real-Time Neurofeedback study includes these scans: Visual Checkerboard (TR = 1400ms, Multiband).Visual Checkerboard (TR = 645ms, Multiband).
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